Detailed information of SNP:
|
SNP ID:
sf0318763291(Gbrowse)
Chromosome: chr03 Position: 18763291 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1302 | 52.00% | 48.00% |
| All Indica | 689 | 23.22% | 76.78% |
| All Japonica | 496 | 94.15% | 5.85% |
| Aus | 64 | 20.31% | 79.69% |
| Indica I | 311 | 23.47% | 76.53% |
| Indica II | 200 | 23.00% | 77.00% |
| Indica Intermediate | 178 | 23.03% | 76.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318763291 | T->C | INTERGENIC | None |