Detailed information of SNP:
|
SNP ID:
sf0318763653(Gbrowse)
Chromosome: chr03 Position: 18763653 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1333 | 83.95% | 16.05% |
| All Indica | 719 | 72.32% | 27.68% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 334 | 74.55% | 25.45% |
| Indica II | 194 | 65.46% | 34.54% |
| Indica Intermediate | 191 | 75.39% | 24.61% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318763653 | G->T | INTERGENIC | None |