Detailed information of SNP:
|
SNP ID:
sf0318764618(Gbrowse)
Chromosome: chr03 Position: 18764618 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 61.37% | 38.63% |
| All Indica | 796 | 94.72% | 5.28% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 94.62% | 5.38% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318764618 | T->G | INTERGENIC | None |