Detailed information of SNP:
|
SNP ID:
sf0318778583(Gbrowse)
Chromosome: chr03 Position: 18778583 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 56.72% | 43.28% |
| All Indica | 779 | 27.73% | 72.27% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 61 | 65.57% | 34.43% |
| Indica I | 358 | 26.54% | 73.46% |
| Indica II | 213 | 30.05% | 69.95% |
| Indica Intermediate | 208 | 27.40% | 72.60% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318778583 | T->A | LOC_Os03g32820(LOC_Os03g32820.1) | Synonymous |