Detailed information of SNP:
|
SNP ID:
sf0318781865(Gbrowse)
Chromosome: chr03 Position: 18781865 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 61.36% | 38.64% |
| All Indica | 792 | 93.43% | 6.57% |
| All Japonica | 496 | 9.68% | 90.32% |
| Aus | 64 | 81.25% | 18.75% |
| Indica I | 370 | 88.92% | 11.08% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 40.86% | 59.14% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318781865 | G->C | INTERGENIC | None |