Detailed information of SNP:
|
SNP ID:
sf0318808028(Gbrowse)
Chromosome: chr03 Position: 18808028 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 59.58% | 40.42% |
| All Indica | 797 | 93.98% | 6.02% |
| All Japonica | 496 | 5.65% | 94.35% |
| Aus | 66 | 63.64% | 36.36% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318808028 | C->A | INTERGENIC | None |