Detailed information of SNP:
|
SNP ID:
sf0318815685(Gbrowse)
Chromosome: chr03 Position: 18815685 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 65.56% | 34.44% |
| All Indica | 772 | 42.88% | 57.12% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 64 | 70.31% | 29.69% |
| Indica I | 369 | 35.23% | 64.77% |
| Indica II | 199 | 66.33% | 33.67% |
| Indica Intermediate | 204 | 33.82% | 66.18% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318815685 | G->A | LOC_Os03g32900(LOC_Os03g32900.1) | Non-Synonymous SNP |