Detailed information of SNP:
|
SNP ID:
sf0318822435(Gbrowse)
Chromosome: chr03 Position: 18822435 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 95.15% | 4.85% |
| All Indica | 783 | 91.70% | 8.30% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 368 | 90.76% | 9.24% |
| Indica II | 210 | 89.05% | 10.95% |
| Indica Intermediate | 205 | 96.10% | 3.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318822435 | T->C | INTERGENIC | None |