Detailed information of SNP:
|
SNP ID:
sf0318826887(Gbrowse)
Chromosome: chr03 Position: 18826887 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 76.43% | 23.57% |
| All Indica | 762 | 60.63% | 39.37% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 346 | 52.31% | 47.69% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 204 | 47.06% | 52.94% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318826887 | C->T | LOC_Os03g32930(LOC_Os03g32930.1) | INTRON |