Detailed information of SNP:
|
SNP ID:
sf0318827873(Gbrowse)
Chromosome: chr03 Position: 18827873 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1359 | 53.42% | 46.58% |
| All Indica | 754 | 25.60% | 74.40% |
| All Japonica | 495 | 93.33% | 6.67% |
| Aus | 57 | 63.16% | 36.84% |
| Indica I | 367 | 21.80% | 78.20% |
| Indica II | 191 | 46.60% | 53.40% |
| Indica Intermediate | 196 | 12.24% | 87.76% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318827873 | C->G | LOC_Os03g32930(LOC_Os03g32930.1) | Synonymous |