Detailed information of SNP:
SNP ID:
sf0318924486(Gbrowse)
Chromosome: chr03 Position: 18924486 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 64.20% | 35.80% |
All Indica | 799 | 98.25% | 1.75% |
All Japonica | 497 | 7.44% | 92.56% |
Aus | 67 | 92.54% | 7.46% |
Indica I | 375 | 98.67% | 1.33% |
Indica II | 213 | 97.18% | 2.82% |
Indica Intermediate | 211 | 98.58% | 1.42% |
Temperate Japonica | 335 | 0.00% | 100.00% |
Tropical Japonica | 94 | 34.04% | 65.96% |
Japonica Intermediate | 68 | 7.35% | 92.65% |
Group VI/Aromatic | 14 | 28.57% | 71.43% |
Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0318924486 | T->C | INTERGENIC | None |