Detailed information of SNP:
|
SNP ID:
sf0318926998(Gbrowse)
Chromosome: chr03 Position: 18926998 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 87.17% | 12.83% |
| All Indica | 793 | 82.85% | 17.15% |
| All Japonica | 495 | 91.92% | 8.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 86.33% | 13.67% |
| Indica II | 211 | 75.36% | 24.64% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318926998 | A->C | LOC_Os03g33080(LOC_Os03g33080.1) | Non-Synonymous SNP |