Detailed information of SNP:



SNP ID: sf0318941332(Gbrowse)

Chromosome: chr03

Position: 18941332
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1338 94.39% 5.61%
All Indica722 90.17% 9.83%
All Japonica496 99.80% 0.20%
Aus65 100.00% 0.00%
Indica I333 90.99% 9.01%
Indica II192 93.75% 6.25%
Indica Intermediate197 85.28% 14.72%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate67 98.51% 1.49%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 92.68% 7.32%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0318941332 C->T LOC_Os03g33100(LOC_Os03g33100.1) INTRON
sf0318941332 C->T LOC_Os03g33100(LOC_Os03g33100.1) SNPs that disrupt splice sites