Detailed information of SNP:
SNP ID:
sf0318941332(Gbrowse)
Chromosome: chr03 Position: 18941332 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1338 | 94.39% | 5.61% |
All Indica | 722 | 90.17% | 9.83% |
All Japonica | 496 | 99.80% | 0.20% |
Aus | 65 | 100.00% | 0.00% |
Indica I | 333 | 90.99% | 9.01% |
Indica II | 192 | 93.75% | 6.25% |
Indica Intermediate | 197 | 85.28% | 14.72% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 67 | 98.51% | 1.49% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0318941332 | C->T | LOC_Os03g33100(LOC_Os03g33100.1) | INTRON |
sf0318941332 | C->T | LOC_Os03g33100(LOC_Os03g33100.1) | SNPs that disrupt splice sites |