Detailed information of SNP:
|
SNP ID:
sf0318952978(Gbrowse)
Chromosome: chr03 Position: 18952978 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 64.08% | 35.92% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 496 | 9.07% | 90.93% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318952978 | A->C | LOC_Os03g33130(LOC_Os03g33130.1) | INTRON |