Detailed information of SNP:
|
SNP ID:
sf0318953939(Gbrowse)
Chromosome: chr03 Position: 18953939 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 59.14% | 40.86% |
| All Indica | 781 | 91.04% | 8.96% |
| All Japonica | 497 | 7.65% | 92.35% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 366 | 93.17% | 6.83% |
| Indica II | 211 | 90.52% | 9.48% |
| Indica Intermediate | 204 | 87.75% | 12.25% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318953939 | T->C | LOC_Os03g33130(LOC_Os03g33130.1) | INTRON |
| sf0318953939 | T->C | LOC_Os03g33130(LOC_Os03g33130.1) | SNPs that disrupt splice sites |