Detailed information of SNP:
|
SNP ID:
sf0318958911(Gbrowse)
Chromosome: chr03 Position: 18958911 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 59.94% | 40.06% |
| All Indica | 794 | 92.32% | 7.68% |
| All Japonica | 496 | 6.85% | 93.15% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 371 | 92.99% | 7.01% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 31.18% | 68.82% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318958911 | G->A | LOC_Os03g33140(LOC_Os03g33140.1) | Non-Synonymous SNP |