Detailed information of SNP:
|
SNP ID:
sf0318986506(Gbrowse)
Chromosome: chr03 Position: 18986506 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 61.17% | 38.83% |
| All Indica | 796 | 93.84% | 6.16% |
| All Japonica | 495 | 6.67% | 93.33% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 95.44% | 4.56% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 31.91% | 68.09% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0318986506 | G->A | LOC_Os03g33190(LOC_Os03g33190.1) | INTRON |