Detailed information of SNP:
|
SNP ID:
sf0319003496(Gbrowse)
Chromosome: chr03 Position: 19003496 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 91.81% | 8.19% |
| All Indica | 798 | 89.97% | 10.03% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319003496 | A->G | INTERGENIC | None |