Detailed information of SNP:
|
SNP ID:
sf0319030175(Gbrowse)
Chromosome: chr03 Position: 19030175 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1288 | 93.94% | 6.06% |
| All Indica | 674 | 89.76% | 10.24% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 301 | 85.71% | 14.29% |
| Indica II | 196 | 93.88% | 6.12% |
| Indica Intermediate | 177 | 92.09% | 7.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319030175 | G->T | INTERGENIC | None |