Detailed information of SNP:
|
SNP ID:
sf0319042272(Gbrowse)
Chromosome: chr03 Position: 19042272 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 60.17% | 39.83% |
| All Indica | 792 | 93.43% | 6.57% |
| All Japonica | 496 | 5.24% | 94.76% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 95.43% | 4.57% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 25.81% | 74.19% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319042272 | C->T | LOC_Os03g33300(LOC_Os03g33300.1) | Synonymous |