Detailed information of SNP:
|
SNP ID:
sf0319056207(Gbrowse)
Chromosome: chr03 Position: 19056207 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 63.06% | 36.94% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 495 | 6.46% | 93.54% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 24.73% | 75.27% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319056207 | C->T | LOC_Os03g33319(LOC_Os03g33319.1) | INTRON |