Detailed information of SNP:



SNP ID: sf0319056207(Gbrowse)

Chromosome: chr03

Position: 19056207
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1416 63.06% 36.94%
All Indica799 97.50% 2.50%
All Japonica495 6.46% 93.54%
Aus67 91.04% 8.96%
Indica I375 97.87% 2.13%
Indica II213 96.71% 3.29%
Indica Intermediate211 97.63% 2.37%
Temperate Japonica335 1.79% 98.21%
Tropical Japonica93 24.73% 75.27%
Japonica Intermediate67 4.48% 95.52%
Group VI/Aromatic14 7.14% 92.86%
Intermediate41 48.78% 51.22%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0319056207 C->T LOC_Os03g33319(LOC_Os03g33319.1) INTRON