Detailed information of SNP:
|
SNP ID:
sf0319057464(Gbrowse)
Chromosome: chr03 Position: 19057464 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 63.47% | 36.53% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 497 | 7.24% | 92.76% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 27.66% | 72.34% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319057464 | T->C | LOC_Os03g33319(LOC_Os03g33319.1) | Non-Synonymous SNP |