Detailed information of SNP:
|
SNP ID:
sf0319077778(Gbrowse)
Chromosome: chr03 Position: 19077778 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 60.03% | 39.97% |
| All Indica | 785 | 93.63% | 6.37% |
| All Japonica | 494 | 3.85% | 96.15% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 369 | 94.58% | 5.42% |
| Indica II | 206 | 92.23% | 7.77% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 91 | 17.58% | 82.42% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319077778 | T->C | INTERGENIC | None |