Detailed information of SNP:
|
SNP ID:
sf0319078277(Gbrowse)
Chromosome: chr03 Position: 19078277 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 59.70% | 40.30% |
| All Indica | 794 | 92.82% | 7.18% |
| All Japonica | 495 | 4.04% | 95.96% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 211 | 90.52% | 9.48% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 92 | 19.57% | 80.43% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319078277 | A->G | LOC_Os03g33370(LOC_Os03g33370.1) | Synonymous |