Detailed information of SNP:
|
SNP ID:
sf0319079079(Gbrowse)
Chromosome: chr03 Position: 19079079 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 59.24% | 40.76% |
| All Indica | 781 | 92.96% | 7.04% |
| All Japonica | 493 | 3.45% | 96.55% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 369 | 93.50% | 6.50% |
| Indica II | 206 | 90.29% | 9.71% |
| Indica Intermediate | 206 | 94.66% | 5.34% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 91 | 17.58% | 82.42% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319079079 | G->A | LOC_Os03g33370(LOC_Os03g33370.1) | Non-Synonymous SNP |