Detailed information of SNP:
|
SNP ID:
sf0319079297(Gbrowse)
Chromosome: chr03 Position: 19079297 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 61.70% | 38.30% |
| All Indica | 791 | 96.46% | 3.54% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 207 | 98.55% | 1.45% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319079297 | C->G | LOC_Os03g33370(LOC_Os03g33370.1) | Non-Synonymous SNP |