Detailed information of SNP:
|
SNP ID:
sf0319081168(Gbrowse)
Chromosome: chr03 Position: 19081168 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 60.26% | 39.74% |
| All Indica | 783 | 95.02% | 4.98% |
| All Japonica | 494 | 3.04% | 96.96% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 369 | 96.48% | 3.52% |
| Indica II | 206 | 91.75% | 8.25% |
| Indica Intermediate | 208 | 95.67% | 4.33% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 91 | 14.29% | 85.71% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319081168 | C->G | INTERGENIC | None |