Detailed information of SNP:
|
SNP ID:
sf0319081708(Gbrowse)
Chromosome: chr03 Position: 19081708 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 60.27% | 39.73% |
| All Indica | 782 | 95.14% | 4.86% |
| All Japonica | 493 | 3.25% | 96.75% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 370 | 96.22% | 3.78% |
| Indica II | 206 | 92.72% | 7.28% |
| Indica Intermediate | 206 | 95.63% | 4.37% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 92 | 15.22% | 84.78% |
| Japonica Intermediate | 66 | 1.52% | 98.48% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319081708 | C->T | INTERGENIC | None |