Detailed information of SNP:
|
SNP ID:
sf0319085236(Gbrowse)
Chromosome: chr03 Position: 19085236 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 58.35% | 41.65% |
| All Indica | 796 | 91.96% | 8.04% |
| All Japonica | 496 | 2.82% | 97.18% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 373 | 94.10% | 5.90% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 10.75% | 89.25% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319085236 | C->T | LOC_Os03g33380(LOC_Os03g33380.1) | INTRON |