Detailed information of SNP:
|
SNP ID:
sf0319087521(Gbrowse)
Chromosome: chr03 Position: 19087521 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 62.28% | 37.72% |
| All Indica | 788 | 97.34% | 2.66% |
| All Japonica | 495 | 5.05% | 94.95% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 204 | 99.02% | 0.98% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 22.58% | 77.42% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319087521 | C->T | INTERGENIC | None |