Detailed information of SNP:
|
SNP ID:
sf0319087665(Gbrowse)
Chromosome: chr03 Position: 19087665 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 61.83% | 38.17% |
| All Indica | 794 | 95.72% | 4.28% |
| All Japonica | 496 | 5.24% | 94.76% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319087665 | A->G | INTERGENIC | None |