Detailed information of SNP:
|
SNP ID:
sf0319089962(Gbrowse)
Chromosome: chr03 Position: 19089962 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 60.58% | 39.42% |
| All Indica | 791 | 94.31% | 5.69% |
| All Japonica | 496 | 4.64% | 95.36% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 209 | 91.87% | 8.13% |
| Indica Intermediate | 208 | 94.71% | 5.29% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 20.43% | 79.57% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319089962 | C->T | INTERGENIC | None |