Detailed information of SNP:
|
SNP ID:
sf0319110790(Gbrowse)
Chromosome: chr03 Position: 19110790 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 84.38% | 15.62% |
| All Indica | 798 | 74.56% | 25.44% |
| All Japonica | 494 | 96.96% | 3.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 66.93% | 33.07% |
| Indica II | 212 | 83.02% | 16.98% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 85.87% | 14.13% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319110790 | G->A | INTERGENIC | None |