Detailed information of SNP:
|
SNP ID:
sf0319128479(Gbrowse)
Chromosome: chr03 Position: 19128479 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 56.63% | 43.37% |
| All Indica | 795 | 89.94% | 10.06% |
| All Japonica | 494 | 0.61% | 99.39% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 94.89% | 5.11% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 65 | 1.54% | 98.46% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319128479 | A->G | LOC_Os03g33490(LOC_Os03g33490.1) | Non-Synonymous SNP |