Detailed information of SNP:



SNP ID: sf0319140702(Gbrowse)

Chromosome: chr03

Position: 19140702
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 94.15% 5.85%
All Indica799 99.75% 0.25%
All Japonica497 84.51% 15.49%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.06% 0.94%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 80.30% 19.70%
Tropical Japonica94 95.74% 4.26%
Japonica Intermediate68 89.71% 10.29%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0319140702 T->C LOC_Os03g33500(LOC_Os03g33500.1) INTRON