Detailed information of SNP:
SNP ID:
sf0319140702(Gbrowse)
Chromosome: chr03 Position: 19140702 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 94.15% | 5.85% |
All Indica | 799 | 99.75% | 0.25% |
All Japonica | 497 | 84.51% | 15.49% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 211 | 100.00% | 0.00% |
Temperate Japonica | 335 | 80.30% | 19.70% |
Tropical Japonica | 94 | 95.74% | 4.26% |
Japonica Intermediate | 68 | 89.71% | 10.29% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0319140702 | T->C | LOC_Os03g33500(LOC_Os03g33500.1) | INTRON |