Detailed information of SNP:
|
SNP ID:
sf0319152746(Gbrowse)
Chromosome: chr03 Position: 19152746 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1379 | 91.52% | 8.48% |
| All Indica | 760 | 88.95% | 11.05% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 343 | 84.55% | 15.45% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 205 | 89.27% | 10.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319152746 | G->A | LOC_Os03g33530(LOC_Os03g33530.1) | Non-Synonymous SNP |