Detailed information of SNP:
|
SNP ID:
sf0319207611(Gbrowse)
Chromosome: chr03 Position: 19207611 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1327 | 94.65% | 5.35% |
| All Indica | 714 | 91.04% | 8.96% |
| All Japonica | 492 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 337 | 90.21% | 9.79% |
| Indica II | 192 | 95.83% | 4.17% |
| Indica Intermediate | 185 | 87.57% | 12.43% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319207611 | C->T | INTERGENIC | None |