Detailed information of SNP:
|
SNP ID:
sf0319281301(Gbrowse)
Chromosome: chr03 Position: 19281301 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 58.23% | 41.77% |
| All Indica | 795 | 88.68% | 11.32% |
| All Japonica | 492 | 7.11% | 92.89% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 373 | 90.62% | 9.38% |
| Indica II | 212 | 84.91% | 15.09% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 30.11% | 69.89% |
| Japonica Intermediate | 65 | 10.77% | 89.23% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319281301 | T->C | INTERGENIC | None |