Detailed information of SNP:
|
SNP ID:
sf0319281432(Gbrowse)
Chromosome: chr03 Position: 19281432 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1326 | 63.20% | 36.80% |
| All Indica | 717 | 41.42% | 58.58% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 61 | 16.39% | 83.61% |
| Indica I | 339 | 40.41% | 59.59% |
| Indica II | 189 | 47.09% | 52.91% |
| Indica Intermediate | 189 | 37.57% | 62.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319281432 | G->A | INTERGENIC | None |