Detailed information of SNP:
|
SNP ID:
sf0319292249(Gbrowse)
Chromosome: chr03 Position: 19292249 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 63.95% | 36.05% |
| All Indica | 779 | 38.90% | 61.10% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 369 | 44.44% | 55.56% |
| Indica II | 207 | 34.30% | 65.70% |
| Indica Intermediate | 203 | 33.50% | 66.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319292249 | T->C | INTERGENIC | None |