Detailed information of SNP:
|
SNP ID:
sf0319299357(Gbrowse)
Chromosome: chr03 Position: 19299357 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 91.36% | 8.64% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 490 | 81.22% | 18.78% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 331 | 94.26% | 5.74% |
| Tropical Japonica | 93 | 51.61% | 48.39% |
| Japonica Intermediate | 66 | 57.58% | 42.42% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319299357 | G->A | LOC_Os03g33760(LOC_Os03g33760.1) | Non-Synonymous SNP |