Detailed information of SNP:
|
SNP ID:
sf0319336225(Gbrowse)
Chromosome: chr03 Position: 19336225 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 60.63% | 39.37% |
| All Indica | 787 | 93.77% | 6.23% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 97.04% | 2.96% |
| Indica II | 209 | 86.60% | 13.40% |
| Indica Intermediate | 206 | 95.15% | 4.85% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319336225 | T->C | INTERGENIC | None |