Detailed information of SNP:
|
SNP ID:
sf0319341693(Gbrowse)
Chromosome: chr03 Position: 19341693 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1322 | 79.35% | 20.65% |
| All Indica | 721 | 66.57% | 33.43% |
| All Japonica | 488 | 99.39% | 0.61% |
| Aus | 61 | 67.21% | 32.79% |
| Indica I | 340 | 80.29% | 19.71% |
| Indica II | 196 | 43.88% | 56.12% |
| Indica Intermediate | 185 | 65.41% | 34.59% |
| Temperate Japonica | 330 | 99.39% | 0.61% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319341693 | A->G | INTERGENIC | None |