Detailed information of SNP:
|
SNP ID:
sf0319342326(Gbrowse)
Chromosome: chr03 Position: 19342326 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 59.04% | 40.96% |
| All Indica | 779 | 92.04% | 7.96% |
| All Japonica | 494 | 6.88% | 93.12% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 367 | 93.19% | 6.81% |
| Indica II | 205 | 89.27% | 10.73% |
| Indica Intermediate | 207 | 92.75% | 7.25% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 92 | 27.17% | 72.83% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319342326 | A->G | INTERGENIC | None |