Detailed information of SNP:
|
SNP ID:
sf0319343648(Gbrowse)
Chromosome: chr03 Position: 19343648 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1134 | 59.08% | 40.92% |
| All Indica | 563 | 27.71% | 72.29% |
| All Japonica | 478 | 96.86% | 3.14% |
| Aus | 47 | 40.43% | 59.57% |
| Indica I | 273 | 31.87% | 68.13% |
| Indica II | 144 | 23.61% | 76.39% |
| Indica Intermediate | 146 | 23.97% | 76.03% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 76 | 92.11% | 7.89% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 32 | 59.38% | 40.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319343648 | C->T | INTERGENIC | None |