Detailed information of SNP:
|
SNP ID:
sf0319371496(Gbrowse)
Chromosome: chr03 Position: 19371496 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1360 | 78.24% | 21.76% |
| All Indica | 743 | 67.29% | 32.71% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 38.46% | 61.54% |
| Indica I | 351 | 74.36% | 25.64% |
| Indica II | 200 | 54.00% | 46.00% |
| Indica Intermediate | 192 | 68.23% | 31.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319371496 | G->A | INTERGENIC | None |