Detailed information of SNP:
|
SNP ID:
sf0319385318(Gbrowse)
Chromosome: chr03 Position: 19385318 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 96.44% | 3.56% |
| All Indica | 757 | 93.79% | 6.21% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 357 | 93.28% | 6.72% |
| Indica II | 200 | 95.00% | 5.00% |
| Indica Intermediate | 200 | 93.50% | 6.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319385318 | T->A | INTERGENIC | None |