Detailed information of SNP:
|
SNP ID:
sf0319395711(Gbrowse)
Chromosome: chr03 Position: 19395711 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1354 | 77.92% | 22.08% |
| All Indica | 741 | 66.40% | 33.60% |
| All Japonica | 495 | 97.78% | 2.22% |
| Aus | 63 | 41.27% | 58.73% |
| Indica I | 349 | 73.35% | 26.65% |
| Indica II | 199 | 54.27% | 45.73% |
| Indica Intermediate | 193 | 66.32% | 33.68% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319395711 | T->C | INTERGENIC | None |