Detailed information of SNP:
|
SNP ID:
sf0319432618(Gbrowse)
Chromosome: chr03 Position: 19432618 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 63.04% | 36.96% |
| All Indica | 798 | 96.87% | 3.13% |
| All Japonica | 494 | 6.68% | 93.32% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 65 | 4.62% | 95.38% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319432618 | T->C | LOC_Os03g34102(LOC_Os03g34102.1) | Synonymous |