Detailed information of SNP:
|
SNP ID:
sf0319433630(Gbrowse)
Chromosome: chr03 Position: 19433630 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 60.24% | 39.76% |
| All Indica | 773 | 93.53% | 6.47% |
| All Japonica | 496 | 6.25% | 93.75% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 366 | 93.44% | 6.56% |
| Indica II | 205 | 92.20% | 7.80% |
| Indica Intermediate | 202 | 95.05% | 4.95% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 30.11% | 69.89% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0319433630 | C->T | INTERGENIC | None |